IL_6OLI_120

3D structure

PDB id

6OLI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human ribosome nascent chain complex selectively stalled by a drug-like small molecule (USO1-RNC)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CGG*CAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OLI_120 not in the Motif Atlas

Geometric match to IL_5UNE_001

Geometric discrepancy: 0.1735

The information below is about IL_5UNE_001

Detailed Annotation

Isolated non-canonical cWW contact

Broad Annotation

No text annotation

Motif group

IL_87720.1

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

8

Unit IDs

6OLI|1|t|C|454
6OLI|1|t|G|455
6OLI|1|t|G|456
*
6OLI|1|t|C|686
6OLI|1|t|A|687
6OLI|1|t|G|688

Current chains

Chain t

28S ribosomal RNA

Nearby chains

Chain G

60S ribosomal protein L6

Chain r

60S ribosomal protein L28