IL_6OLI_142

3D structure

PDB id

6OLI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human ribosome nascent chain complex selectively stalled by a drug-like small molecule (USO1-RNC)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CCACG*CCGUCG

Length

11 nucleotides

Bulged bases

6OLI|1|t|U|1192

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OLI_142 not in the Motif Atlas

Geometric match to IL_5TBW_121

Geometric discrepancy: 0.3067

The information below is about IL_5TBW_121

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_05145.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

13

Unit IDs

6OLI|1|t|C|1068
6OLI|1|t|C|1069
6OLI|1|t|A|1070
6OLI|1|t|C|1071
6OLI|1|t|G|1072
*
6OLI|1|t|C|1189
6OLI|1|t|C|1190
6OLI|1|t|G|1191
6OLI|1|t|U|1192
6OLI|1|t|C|1193
6OLI|1|t|G|1194

Current chains

Chain t

28S ribosomal RNA

Nearby chains

Chain H

60S ribosomal protein L7

Chain U

60S ribosomal protein L21