IL_6OLI_178

3D structure

PDB id

6OLI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human ribosome nascent chain complex selectively stalled by a drug-like small molecule (USO1-RNC)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GACCCCAGAAAA*UGAAAAUGGAUGGCGC

Length

28 nucleotides

Bulged bases

6OLI|1|t|C|1916, 6OLI|1|t|A|2022

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OLI_178 not in the Motif Atlas

Geometric match to IL_5TBW_052

Geometric discrepancy: 0.1887

The information below is about IL_5TBW_052

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_53762.1

Basepair signature

cWW-tSH-tHH-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-cWW-L

Number of instances in this motif group

2

Unit IDs

6OLI|1|t|G|1914
6OLI|1|t|A|1915
6OLI|1|t|C|1916
6OLI|1|t|C|1917
6OLI|1|t|C|1918
6OLI|1|t|C|1919
6OLI|1|t|A|1920
6OLI|1|t|G|1921
6OLI|1|t|A|1922
6OLI|1|t|A|1923
6OLI|1|t|A|1924
6OLI|1|t|A|1925
*
6OLI|1|t|U|2019
6OLI|1|t|G|2020
6OLI|1|t|A|2021
6OLI|1|t|A|2022
6OLI|1|t|A|2023
6OLI|1|t|A|2024
6OLI|1|t|U|2025
6OLI|1|t|G|2026
6OLI|1|t|G|2027
6OLI|1|t|A|2028
6OLI|1|t|U|2029
6OLI|1|t|G|2030
6OLI|1|t|G|2031
6OLI|1|t|C|2032
6OLI|1|t|G|2033
6OLI|1|t|C|2034

Current chains

Chain t

28S ribosomal RNA

Nearby chains

Chain B

60S ribosomal protein L3

Chain E

5S ribosomal RNA; 5S rRNA

Chain K

60S ribosomal protein L10

Chain P

60S ribosomal protein L13a

Chain g

60S ribosomal protein L35a

Chain n

60S ribosomal protein L40