IL_6OLI_192

3D structure

PDB id

6OLI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human ribosome nascent chain complex selectively stalled by a drug-like small molecule (USO1-RNC)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

ACG*CU

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OLI_192 not in the Motif Atlas

Geometric match to IL_4LFB_038

Geometric discrepancy: 0.2965

The information below is about IL_4LFB_038

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_34520.2

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

62

Unit IDs

6OLI|1|t|A|2456
6OLI|1|t|C|2457
6OLI|1|t|G|2458
*
6OLI|1|t|C|2478
6OLI|1|t|U|2479

Current chains

Chain t

28S ribosomal RNA

Nearby chains

Chain D

5.8S ribosomal RNA; 5.8S rRNA

Chain I

60S ribosomal protein L7a

Chain Y

60S ribosomal protein L23a