IL_6OLI_205

3D structure

PDB id

6OLI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human ribosome nascent chain complex selectively stalled by a drug-like small molecule (USO1-RNC)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CGUAAC*GGAUAAG

Length

13 nucleotides

Bulged bases

6OLI|1|t|U|2859

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OLI_205 not in the Motif Atlas

Homologous match to IL_8C3A_084

Geometric discrepancy: 0.1079

The information below is about IL_8C3A_084

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65969.4

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

6OLI|1|t|C|2846
6OLI|1|t|G|2847
6OLI|1|t|U|2848
6OLI|1|t|A|2849
6OLI|1|t|A|2850
6OLI|1|t|C|2851
*
6OLI|1|t|G|2856
6OLI|1|t|G|2857
6OLI|1|t|A|2858
6OLI|1|t|U|2859
6OLI|1|t|A|2860
6OLI|1|t|A|2861
6OLI|1|t|G|2862

Current chains

Chain t

28S ribosomal RNA

Nearby chains

Chain S2

Small subunit ribosomal RNA; SSU rRNA

Chain o

60S ribosomal protein L41

Chain q

60S ribosomal protein L37a