IL_6OLI_215

3D structure

PDB id

6OLI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human ribosome nascent chain complex selectively stalled by a drug-like small molecule (USO1-RNC)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CCAAAUGCCUCG*CGCG

Length

16 nucleotides

Bulged bases

6OLI|1|t|A|3756, 6OLI|1|t|C|3762, 6OLI|1|t|C|3781

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OLI_215 not in the Motif Atlas

Geometric match to IL_5TBW_090

Geometric discrepancy: 0.1677

The information below is about IL_5TBW_090

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_66080.1

Basepair signature

cWW-cWW-tSH-L-cWW-L

Number of instances in this motif group

5

Unit IDs

6OLI|1|t|C|3752
6OLI|1|t|C|3753
6OLI|1|t|A|3754
6OLI|1|t|A|3755
6OLI|1|t|A|3756
6OLI|1|t|U|3757
6OLI|1|t|G|3758
6OLI|1|t|C|3759
6OLI|1|t|C|3760
6OLI|1|t|U|3761
6OLI|1|t|C|3762
6OLI|1|t|G|3763
*
6OLI|1|t|C|3779
6OLI|1|t|G|3780
6OLI|1|t|C|3781
6OLI|1|t|G|3782

Current chains

Chain t

28S ribosomal RNA

Nearby chains

Chain S2

Small subunit ribosomal RNA; SSU rRNA

Chain o

60S ribosomal protein L41

Chain u

Transfer RNA; tRNA