IL_6OLI_247

3D structure

PDB id

6OLI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human ribosome nascent chain complex selectively stalled by a drug-like small molecule (USO1-RNC)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GAUUAU*AGAAUC

Length

12 nucleotides

Bulged bases

6OLI|1|t|A|4670

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OLI_247 not in the Motif Atlas

Geometric match to IL_5J7L_350

Geometric discrepancy: 0.2334

The information below is about IL_5J7L_350

Detailed Annotation

UAA/GAN with extra cWW

Broad Annotation

No text annotation

Motif group

IL_49767.8

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

6

Unit IDs

6OLI|1|t|G|4642
6OLI|1|t|A|4643
6OLI|1|t|U|4644
6OLI|1|t|U|4645
6OLI|1|t|A|4646
6OLI|1|t|U|4647
*
6OLI|1|t|A|4667
6OLI|1|t|G|4668
6OLI|1|t|A|4669
6OLI|1|t|A|4670
6OLI|1|t|U|4671
6OLI|1|t|C|4672

Current chains

Chain t

28S ribosomal RNA

Nearby chains

Chain J

60S ribosomal protein L9

Chain P

60S ribosomal protein L13a

Chain n

60S ribosomal protein L40