IL_6OLZ_021

3D structure

PDB id

6OLZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human ribosome nascent chain complex (PCSK9-RNC) stalled by a drug-like molecule with PP tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GAGGA*UUUCC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OLZ_021 not in the Motif Atlas

Geometric match to IL_5TBW_121

Geometric discrepancy: 0.3205

The information below is about IL_5TBW_121

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_05145.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

13

Unit IDs

6OLZ|1|A2|G|456
6OLZ|1|A2|A|457
6OLZ|1|A2|G|458
6OLZ|1|A2|G|459
6OLZ|1|A2|A|460
*
6OLZ|1|A2|U|682
6OLZ|1|A2|U|683
6OLZ|1|A2|U|684
6OLZ|1|A2|C|685
6OLZ|1|A2|C|686

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain AE

60S ribosomal protein L6

Chain At

60S ribosomal protein L28