IL_6OLZ_099

3D structure

PDB id

6OLZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human ribosome nascent chain complex (PCSK9-RNC) stalled by a drug-like molecule with PP tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CGAUCC*GGGGAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OLZ_099 not in the Motif Atlas

Geometric match to IL_7A0S_018

Geometric discrepancy: 0.373

The information below is about IL_7A0S_018

Detailed Annotation

Triple sheared with non-canonical cWW

Broad Annotation

Triple sheared

Motif group

IL_29495.1

Basepair signature

cWW-tSH-tSH-tHS-tHS-cWW

Number of instances in this motif group

6

Unit IDs

6OLZ|1|A2|C|2568
6OLZ|1|A2|G|2569
6OLZ|1|A2|A|2570
6OLZ|1|A2|U|2571
6OLZ|1|A2|C|2572
6OLZ|1|A2|C|2573
*
6OLZ|1|A2|G|2730
6OLZ|1|A2|G|2731
6OLZ|1|A2|G|2732
6OLZ|1|A2|G|2733
6OLZ|1|A2|A|2734
6OLZ|1|A2|G|2735

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain AA

60S ribosomal protein L8

Chain AZ

60S ribosomal protein L27

Chain Ag

60S ribosomal protein L34