IL_6OLZ_108

3D structure

PDB id

6OLZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human ribosome nascent chain complex (PCSK9-RNC) stalled by a drug-like molecule with PP tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

AGUCGG*CUGU

Length

10 nucleotides

Bulged bases

6OLZ|1|A2|G|3810

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OLZ_108 not in the Motif Atlas

Homologous match to IL_8C3A_083

Geometric discrepancy: 0.1504

The information below is about IL_8C3A_083

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_06455.1

Basepair signature

cWW-L-R-L-cWW-L-L

Number of instances in this motif group

7

Unit IDs

6OLZ|1|A2|A|2829
6OLZ|1|A2|G|2830
6OLZ|1|A2|U|2831
6OLZ|1|A2|C|2832
6OLZ|1|A2|G|2833
6OLZ|1|A2|G|2834
*
6OLZ|1|A2|C|3808
6OLZ|1|A2|U|3809
6OLZ|1|A2|G|3810
6OLZ|1|A2|U|3811

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain AB

60S ribosomal protein L3

Chain AV

60S ribosomal protein L23