IL_6OLZ_109

3D structure

PDB id

6OLZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human ribosome nascent chain complex (PCSK9-RNC) stalled by a drug-like molecule with PP tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CGUAAC*GGAUAAG

Length

13 nucleotides

Bulged bases

6OLZ|1|A2|U|2859

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OLZ_109 not in the Motif Atlas

Geometric match to IL_4V9F_063

Geometric discrepancy: 0.1744

The information below is about IL_4V9F_063

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_20700.1

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

10

Unit IDs

6OLZ|1|A2|C|2846
6OLZ|1|A2|G|2847
6OLZ|1|A2|U|2848
6OLZ|1|A2|A|2849
6OLZ|1|A2|A|2850
6OLZ|1|A2|C|2851
*
6OLZ|1|A2|G|2856
6OLZ|1|A2|G|2857
6OLZ|1|A2|A|2858
6OLZ|1|A2|U|2859
6OLZ|1|A2|A|2860
6OLZ|1|A2|A|2861
6OLZ|1|A2|G|2862

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain An

60S ribosomal protein L41

Chain Ap

60S ribosomal protein L37a

Chain B1

Small subunit ribosomal RNA; SSU rRNA