IL_6OLZ_113

3D structure

PDB id

6OLZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human ribosome nascent chain complex (PCSK9-RNC) stalled by a drug-like molecule with PP tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CGAAGG*UGUUGACG

Length

14 nucleotides

Bulged bases

6OLZ|1|A2|A|3634, 6OLZ|1|A2|U|3650, 6OLZ|1|A2|C|3654

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OLZ_113 not in the Motif Atlas

Homologous match to IL_5TBW_083

Geometric discrepancy: 0.1468

The information below is about IL_5TBW_083

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_64509.1

Basepair signature

cWW-tWW-tWW-tSS-L-cWW

Number of instances in this motif group

2

Unit IDs

6OLZ|1|A2|C|3631
6OLZ|1|A2|G|3632
6OLZ|1|A2|A|3633
6OLZ|1|A2|A|3634
6OLZ|1|A2|G|3635
6OLZ|1|A2|G|3636
*
6OLZ|1|A2|U|3648
6OLZ|1|A2|G|3649
6OLZ|1|A2|U|3650
6OLZ|1|A2|U|3651
6OLZ|1|A2|G|3652
6OLZ|1|A2|A|3653
6OLZ|1|A2|C|3654
6OLZ|1|A2|G|3655

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain AA

60S ribosomal protein L8

Chain Ap

60S ribosomal protein L37a

Chain B1

Small subunit ribosomal RNA; SSU rRNA