IL_6OLZ_195

3D structure

PDB id

6OLZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human ribosome nascent chain complex (PCSK9-RNC) stalled by a drug-like molecule with PP tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UCC*GGGA

Length

7 nucleotides

Bulged bases

6OLZ|1|B1|G|507

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OLZ_195 not in the Motif Atlas

Geometric match to IL_5J7L_286

Geometric discrepancy: 0.3499

The information below is about IL_5J7L_286

Detailed Annotation

Isolated cWS basepair

Broad Annotation

No text annotation

Motif group

IL_42997.3

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

20

Unit IDs

6OLZ|1|B1|U|495
6OLZ|1|B1|C|496
6OLZ|1|B1|C|497
*
6OLZ|1|B1|G|505
6OLZ|1|B1|G|506
6OLZ|1|B1|G|507
6OLZ|1|B1|A|508

Current chains

Chain B1

18S ribosomal RNA

Nearby chains

Chain BE

40S ribosomal protein S4, Y isoform 1

Chain BJ

40S ribosomal protein S9

Chain BY

40S ribosomal protein S24