IL_6OLZ_198

3D structure

PDB id

6OLZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human ribosome nascent chain complex (PCSK9-RNC) stalled by a drug-like molecule with PP tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GAC*GGCC

Length

7 nucleotides

Bulged bases

6OLZ|1|B1|G|547

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OLZ_198 not in the Motif Atlas

Geometric match to IL_7A0S_107

Geometric discrepancy: 0.3497

The information below is about IL_7A0S_107

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_71625.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

78

Unit IDs

6OLZ|1|B1|G|535
6OLZ|1|B1|A|536
6OLZ|1|B1|C|537
*
6OLZ|1|B1|G|546
6OLZ|1|B1|G|547
6OLZ|1|B1|C|548
6OLZ|1|B1|C|549

Current chains

Chain B1

18S ribosomal RNA

Nearby chains

Chain BJ

40S ribosomal protein S9

Chain Be

40S ribosomal protein S30