IL_6OLZ_223

3D structure

PDB id

6OLZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human ribosome nascent chain complex (PCSK9-RNC) stalled by a drug-like molecule with PP tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GGAGUAUG*UGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OLZ_223 not in the Motif Atlas

Homologous match to IL_4V88_440

Geometric discrepancy: 0.1557

The information below is about IL_4V88_440

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_41756.1

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

5

Unit IDs

6OLZ|1|B1|G|1168
6OLZ|1|B1|G|1169
6OLZ|1|B1|A|1170
6OLZ|1|B1|G|1171
6OLZ|1|B1|U|1172
6OLZ|1|B1|A|1173
6OLZ|1|B1|U|1174
6OLZ|1|B1|G|1175
*
6OLZ|1|B1|U|1186
6OLZ|1|B1|G|1187
6OLZ|1|B1|A|1188
6OLZ|1|B1|A|1189
6OLZ|1|B1|A|1190
6OLZ|1|B1|C|1191

Current chains

Chain B1

18S ribosomal RNA

Nearby chains

Chain An

60S ribosomal protein L41

Chain BX

40S ribosomal protein S23