IL_6OLZ_264

3D structure

PDB id

6OLZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human ribosome nascent chain complex (PCSK9-RNC) stalled by a drug-like molecule with PP tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GGCG*CCCC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OLZ_264 not in the Motif Atlas

Geometric match to IL_4EYA_010

Geometric discrepancy: 0.259

The information below is about IL_4EYA_010

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

6OLZ|1|A2|G|730
6OLZ|1|A2|G|731
6OLZ|1|A2|C|732
6OLZ|1|A2|G|733
*
6OLZ|1|A2|C|909
6OLZ|1|A2|C|910
6OLZ|1|A2|C|911
6OLZ|1|A2|C|912

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain AM

60S ribosomal protein L14

Chain AS

60S ribosomal protein L18a