IL_6OLZ_286

3D structure

PDB id

6OLZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human ribosome nascent chain complex (PCSK9-RNC) stalled by a drug-like molecule with PP tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GUG*UAAAC

Length

8 nucleotides

Bulged bases

6OLZ|1|A2|A|3717, 6OLZ|1|A2|A|3718

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OLZ_286 not in the Motif Atlas

Geometric match to IL_4KYY_002

Geometric discrepancy: 0.3431

The information below is about IL_4KYY_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_71625.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

78

Unit IDs

6OLZ|1|A2|G|3674
6OLZ|1|A2|U|3675
6OLZ|1|A2|G|3676
*
6OLZ|1|A2|U|3716
6OLZ|1|A2|A|3717
6OLZ|1|A2|A|3718
6OLZ|1|A2|A|3719
6OLZ|1|A2|C|3720

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain AA

60S ribosomal protein L8

Chain B1

Small subunit ribosomal RNA; SSU rRNA