IL_6OLZ_288

3D structure

PDB id

6OLZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human ribosome nascent chain complex (PCSK9-RNC) stalled by a drug-like molecule with PP tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GAGC*GUUACC

Length

10 nucleotides

Bulged bases

6OLZ|1|A2|A|4347

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OLZ_288 not in the Motif Atlas

Geometric match to IL_7A0S_040

Geometric discrepancy: 0.2844

The information below is about IL_7A0S_040

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_71194.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

6OLZ|1|A2|G|3887
6OLZ|1|A2|A|3888
6OLZ|1|A2|G|3889
6OLZ|1|A2|C|3890
*
6OLZ|1|A2|G|4344
6OLZ|1|A2|U|4345
6OLZ|1|A2|U|4346
6OLZ|1|A2|A|4347
6OLZ|1|A2|C|4348
6OLZ|1|A2|C|4349

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain AA

60S ribosomal protein L8

Chain Bv

Transfer RNA; tRNA