IL_6OM0_173
3D structure
- PDB id
- 6OM0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human ribosome nascent chain complex (PCSK9-RNC) stalled by a drug-like molecule with AP and PE tRNAs
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GACCCCAGAAAA*UGAAAAUGGAUGGCGC
- Length
- 28 nucleotides
- Bulged bases
- 6OM0|1|t|C|1916, 6OM0|1|t|A|2022
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6OM0_173 not in the Motif Atlas
- Geometric match to IL_5TBW_052
- Geometric discrepancy: 0.1747
- The information below is about IL_5TBW_052
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_53762.1
- Basepair signature
- cWW-tSH-tHH-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
6OM0|1|t|G|1914
6OM0|1|t|A|1915
6OM0|1|t|C|1916
6OM0|1|t|C|1917
6OM0|1|t|C|1918
6OM0|1|t|C|1919
6OM0|1|t|A|1920
6OM0|1|t|G|1921
6OM0|1|t|A|1922
6OM0|1|t|A|1923
6OM0|1|t|A|1924
6OM0|1|t|A|1925
*
6OM0|1|t|U|2019
6OM0|1|t|G|2020
6OM0|1|t|A|2021
6OM0|1|t|A|2022
6OM0|1|t|A|2023
6OM0|1|t|A|2024
6OM0|1|t|U|2025
6OM0|1|t|G|2026
6OM0|1|t|G|2027
6OM0|1|t|A|2028
6OM0|1|t|U|2029
6OM0|1|t|G|2030
6OM0|1|t|G|2031
6OM0|1|t|C|2032
6OM0|1|t|G|2033
6OM0|1|t|C|2034
Current chains
- Chain t
- 28S ribosomal RNA
Nearby chains
- Chain B
- 60S ribosomal protein L3
- Chain E
- 5S ribosomal RNA; 5S rRNA
- Chain K
- 60S ribosomal protein L10
- Chain P
- 60S ribosomal protein L13a
- Chain g
- 60S ribosomal protein L35a
- Chain n
- 60S ribosomal protein L40
Coloring options: