IL_6OM0_209

3D structure

PDB id

6OM0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human ribosome nascent chain complex (PCSK9-RNC) stalled by a drug-like molecule with AP and PE tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CCAAAUGCCUCG*CGCG

Length

16 nucleotides

Bulged bases

6OM0|1|t|A|3756, 6OM0|1|t|C|3762, 6OM0|1|t|C|3781

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OM0_209 not in the Motif Atlas

Homologous match to IL_5TBW_090

Geometric discrepancy: 0.1593

The information below is about IL_5TBW_090

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_66080.1

Basepair signature

cWW-cWW-tSH-L-cWW-L

Number of instances in this motif group

5

Unit IDs

6OM0|1|t|C|3752
6OM0|1|t|C|3753
6OM0|1|t|A|3754
6OM0|1|t|A|3755
6OM0|1|t|A|3756
6OM0|1|t|U|3757
6OM0|1|t|G|3758
6OM0|1|t|C|3759
6OM0|1|t|C|3760
6OM0|1|t|U|3761
6OM0|1|t|C|3762
6OM0|1|t|G|3763
*
6OM0|1|t|C|3779
6OM0|1|t|G|3780
6OM0|1|t|C|3781
6OM0|1|t|G|3782

Current chains

Chain t

28S ribosomal RNA

Nearby chains

Chain S2

Small subunit ribosomal RNA; SSU rRNA

Chain o

60S ribosomal protein L41