IL_6OM6_016

3D structure

PDB id

6OM6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of trans-translation inhibitor bound to E. coli 70S ribosome with P site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

6OM6|1|1|G|801, 6OM6|1|1|G|805

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OM6_016 not in the Motif Atlas

Geometric match to IL_7RQB_018

Geometric discrepancy: 0.0912

The information below is about IL_7RQB_018

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_17470.6

Basepair signature

cWW-tWW-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

6OM6|1|1|G|674
6OM6|1|1|A|675
6OM6|1|1|A|676
6OM6|1|1|A|677
6OM6|1|1|C|678
*
6OM6|1|1|G|799
6OM6|1|1|A|800
6OM6|1|1|G|801
6OM6|1|1|A|802
6OM6|1|1|U|803
6OM6|1|1|A|804
6OM6|1|1|G|805
6OM6|1|1|C|806

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L4

Chain L

50S ribosomal protein L15