IL_6OM6_039
3D structure
- PDB id
- 6OM6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of trans-translation inhibitor bound to E. coli 70S ribosome with P site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GUG*CUGC
- Length
- 7 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6OM6_039 not in the Motif Atlas
- Geometric match to IL_8GLP_064
- Geometric discrepancy: 0.375
- The information below is about IL_8GLP_064
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_16315.2
- Basepair signature
- cWW-cWW-L-cWW
- Number of instances in this motif group
- 4
Unit IDs
6OM6|1|1|G|1034
6OM6|1|1|U|1035
6OM6|1|1|G|1036
*
6OM6|1|1|C|1118
6OM6|1|1|U|1119
6OM6|1|1|G|1120
6OM6|1|1|C|1121
Current chains
- Chain 1
- 23S ribosomal RNA
Nearby chains
- Chain 3
- 5S ribosomal RNA; 5S rRNA
- Chain F
- 50S ribosomal protein L6
- Chain M
- 50S ribosomal protein L16
- Chain V
- 50S ribosomal protein L25
- Chain f
- 50S ribosomal protein L36
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