IL_6OM6_072

3D structure

PDB id

6OM6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of trans-translation inhibitor bound to E. coli 70S ribosome with P site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UGCAAAC*GGACGUAUA

Length

16 nucleotides

Bulged bases

6OM6|1|1|A|1801, 6OM6|1|1|C|1816, 6OM6|1|1|U|1820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OM6_072 not in the Motif Atlas

Homologous match to IL_7A0S_065

Geometric discrepancy: 0.0892

The information below is about IL_7A0S_065

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.6

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

6OM6|1|1|U|1798
6OM6|1|1|G|1799
6OM6|1|1|C|1800
6OM6|1|1|A|1801
6OM6|1|1|A|1802
6OM6|1|1|A|1803
6OM6|1|1|C|1804
*
6OM6|1|1|G|1813
6OM6|1|1|G|1814
6OM6|1|1|A|1815
6OM6|1|1|C|1816
6OM6|1|1|G|1817
6OM6|1|1|U|1818
6OM6|1|1|A|1819
6OM6|1|1|U|1820
6OM6|1|1|A|1821

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain 2

Small subunit ribosomal RNA; SSU rRNA

Chain B

50S ribosomal protein L2