IL_6OM6_086

3D structure

PDB id

6OM6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of trans-translation inhibitor bound to E. coli 70S ribosome with P site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CCU*AUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OM6_086 not in the Motif Atlas

Geometric match to IL_4V88_448

Geometric discrepancy: 0.2686

The information below is about IL_4V88_448

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_30342.2

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

10

Unit IDs

6OM6|1|1|C|2103
6OM6|1|1|C|2104
6OM6|1|1|U|2105
*
6OM6|1|1|A|2184
6OM6|1|1|U|2185
6OM6|1|1|G|2186

Current chains

Chain 1

23S ribosomal RNA

Nearby chains