IL_6OM6_190

3D structure

PDB id

6OM6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of trans-translation inhibitor bound to E. coli 70S ribosome with P site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UUAAUUGAUG*UUGAUCGAAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OM6_190 not in the Motif Atlas

Homologous match to IL_5J7L_387

Geometric discrepancy: 0.0743

The information below is about IL_5J7L_387

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61249.1

Basepair signature

cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

6OM6|1|1|U|1851
6OM6|1|1|U|1852
6OM6|1|1|A|1853
6OM6|1|1|A|1854
6OM6|1|1|U|1855
6OM6|1|1|U|1856
6OM6|1|1|G|1857
6OM6|1|1|A|1858
6OM6|1|1|U|1859
6OM6|1|1|G|1860
*
6OM6|1|1|U|1882
6OM6|1|1|U|1883
6OM6|1|1|G|1884
6OM6|1|1|A|1885
6OM6|1|1|U|1886
6OM6|1|1|C|1887
6OM6|1|1|G|1888
6OM6|1|1|A|1889
6OM6|1|1|A|1890
6OM6|1|1|G|1891

Current chains

Chain 1

23S ribosomal RNA

Nearby chains