IL_6OM7_044

3D structure

PDB id

6OM7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human ribosome nascent chain complex (PCSK9-RNC) stalled by a drug-like small molecule with AA and PE tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GUC*GC

Length

5 nucleotides

Bulged bases

6OM7|1|S2|U|607

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OM7_044 not in the Motif Atlas

Homologous match to IL_4V88_414

Geometric discrepancy: 0.4684

The information below is about IL_4V88_414

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

6OM7|1|S2|G|606
6OM7|1|S2|U|607
6OM7|1|S2|C|608
*
6OM7|1|S2|G|635
6OM7|1|S2|C|636

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain SD

40S ribosomal protein S3

Chain SX

40S ribosomal protein S23

Chain Se

40S ribosomal protein S30