IL_6OM7_093

3D structure

PDB id

6OM7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human ribosome nascent chain complex (PCSK9-RNC) stalled by a drug-like small molecule with AA and PE tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UACC*GGAA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OM7_093 not in the Motif Atlas

Geometric match to IL_6CZR_168

Geometric discrepancy: 0.2134

The information below is about IL_6CZR_168

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67743.1

Basepair signature

cWW-cWW-cWH-cWW

Number of instances in this motif group

9

Unit IDs

6OM7|1|S2|U|1714
6OM7|1|S2|A|1715
6OM7|1|S2|C|1716
6OM7|1|S2|C|1717
*
6OM7|1|S2|G|1816
6OM7|1|S2|G|1817
6OM7|1|S2|A|1818
6OM7|1|S2|A|1819

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain SX

40S ribosomal protein S23

Chain o

60S ribosomal protein L41

Chain t

Large subunit ribosomal RNA; LSU rRNA