IL_6OM7_109
3D structure
- PDB id
- 6OM7 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human ribosome nascent chain complex (PCSK9-RNC) stalled by a drug-like small molecule with AA and PE tRNAs
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- GAAC*GAGUUCAAGAGGGC
- Length
- 18 nucleotides
- Bulged bases
- 6OM7|1|t|G|403, 6OM7|1|t|G|407
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6OM7_109 not in the Motif Atlas
- Homologous match to IL_8C3A_015
- Geometric discrepancy: 0.1846
- The information below is about IL_8C3A_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_60992.7
- Basepair signature
- cWW-cWS-tSH-L-tHH-tWH-cWW-tSS-tSH-L-L
- Number of instances in this motif group
- 6
Unit IDs
6OM7|1|t|G|381
6OM7|1|t|A|382
6OM7|1|t|A|383
6OM7|1|t|C|384
*
6OM7|1|t|G|395
6OM7|1|t|A|396
6OM7|1|t|G|397
6OM7|1|t|U|398
6OM7|1|t|U|399
6OM7|1|t|C|400
6OM7|1|t|A|401
6OM7|1|t|A|402
6OM7|1|t|G|403
6OM7|1|t|A|404
6OM7|1|t|G|405
6OM7|1|t|G|406
6OM7|1|t|G|407
6OM7|1|t|C|408
Current chains
- Chain t
- 28S ribosomal RNA
Nearby chains
- Chain D
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain Q
- 60S ribosomal protein L17
- Chain Z
- 60S ribosomal protein L26
- Chain m
- 60S ribosomal protein L39
- Chain y
- Proprotein convertase subtilisin/kexin type 9
Coloring options: