IL_6OM7_190

3D structure

PDB id

6OM7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human ribosome nascent chain complex (PCSK9-RNC) stalled by a drug-like small molecule with AA and PE tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CAG*CGUG

Length

7 nucleotides

Bulged bases

6OM7|1|t|U|2666

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OM7_190 not in the Motif Atlas

Geometric match to IL_4V9F_076

Geometric discrepancy: 0.2471

The information below is about IL_4V9F_076

Detailed Annotation

Isolated tHS basepair with bulges

Broad Annotation

No text annotation

Motif group

IL_87316.2

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

13

Unit IDs

6OM7|1|t|C|2625
6OM7|1|t|A|2626
6OM7|1|t|G|2627
*
6OM7|1|t|C|2664
6OM7|1|t|G|2665
6OM7|1|t|U|2666
6OM7|1|t|G|2667

Current chains

Chain t

28S ribosomal RNA

Nearby chains

Chain h

60S ribosomal protein L34