IL_6OM7_312

3D structure

PDB id

6OM7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human ribosome nascent chain complex (PCSK9-RNC) stalled by a drug-like small molecule with AA and PE tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GUG*UUUUU

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OM7_312 not in the Motif Atlas

Homologous match to IL_8CRE_113

Geometric discrepancy: 0.258

The information below is about IL_8CRE_113

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_51387.3

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

21

Unit IDs

6OM7|1|t|G|4367
6OM7|1|t|U|4368
6OM7|1|t|G|4369
*
6OM7|1|t|U|4397
6OM7|1|t|U|4398
6OM7|1|t|U|4399
6OM7|1|t|U|4400
6OM7|1|t|U|4401

Current chains

Chain t

28S ribosomal RNA

Nearby chains

Chain B

60S ribosomal protein L3

Chain K

60S ribosomal protein L10

Chain u

Transfer RNA; tRNA