3D structure

PDB id
6OPE (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of tRNA^ Ala(GGC) U32-A38 bound to near-cognate 70S A site
Experimental method
X-RAY DIFFRACTION
Resolution
3.1 Å

Loop

Sequence
GACAAC*GCUAAUC
Length
13 nucleotides
Bulged bases
6OPE|1|QA|U|173
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6OPE_009 not in the Motif Atlas
Homologous match to IL_4LFB_009
Geometric discrepancy: 0.0946
The information below is about IL_4LFB_009
Detailed Annotation
tWH-tWH-tHW-tHW
Broad Annotation
No text annotation
Motif group
IL_12745.1
Basepair signature
cWW-tWH-tWH-tHW-tHW-cWW
Number of instances in this motif group
1

Unit IDs

6OPE|1|QA|G|148
6OPE|1|QA|A|149
6OPE|1|QA|C|150
6OPE|1|QA|A|151
6OPE|1|QA|A|152
6OPE|1|QA|C|153
*
6OPE|1|QA|G|168
6OPE|1|QA|C|169
6OPE|1|QA|U|170
6OPE|1|QA|A|171
6OPE|1|QA|A|172
6OPE|1|QA|U|173
6OPE|1|QA|C|174

Current chains

Chain QA
16S rRNA

Nearby chains

Chain QT
30S ribosomal protein S20

Coloring options:


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