IL_6OPE_018

3D structure

PDB id

6OPE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^ Ala(GGC) U32-A38 bound to near-cognate 70S A site

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GGACG*CGGUAC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OPE_018 not in the Motif Atlas

Homologous match to IL_6CZR_130

Geometric discrepancy: 0.1586

The information below is about IL_6CZR_130

Detailed Annotation

6x5 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_88269.3

Basepair signature

cWW-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

4

Unit IDs

6OPE|1|QA|G|446
6OPE|1|QA|G|447
6OPE|1|QA|A|448
6OPE|1|QA|C|449
6OPE|1|QA|G|450
*
6OPE|1|QA|C|483
6OPE|1|QA|G|484
6OPE|1|QA|G|485
6OPE|1|QA|U|486
6OPE|1|QA|A|487
6OPE|1|QA|C|488

Current chains

Chain QA

16S rRNA

Nearby chains

Chain QD

30S ribosomal protein S4

Chain QP

30S ribosomal protein S16

Chain YI

50S ribosomal protein L9