IL_6OPE_034
3D structure
- PDB id
- 6OPE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of tRNA^ Ala(GGC) U32-A38 bound to near-cognate 70S A site
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- GGAGUACG*UGAAAC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6OPE_034 not in the Motif Atlas
- Homologous match to IL_4LFB_034
- Geometric discrepancy: 0.0795
- The information below is about IL_4LFB_034
- Detailed Annotation
- 8x6 Sarcin-Ricin with inserted Y; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_41756.4
- Basepair signature
- cWW-tSH-tHH-cSH-tWH-tHS-cWW-L
- Number of instances in this motif group
- 4
Unit IDs
6OPE|1|QA|G|887
6OPE|1|QA|G|888
6OPE|1|QA|A|889
6OPE|1|QA|G|890
6OPE|1|QA|U|891
6OPE|1|QA|A|892
6OPE|1|QA|C|893
6OPE|1|QA|G|894
*
6OPE|1|QA|U|905
6OPE|1|QA|G|906
6OPE|1|QA|A|907
6OPE|1|QA|A|908
6OPE|1|QA|A|909
6OPE|1|QA|C|910
Current chains
- Chain QA
- 16S rRNA
Nearby chains
- Chain QL
- 30S ribosomal protein S12
- Chain QQ
- 30S ribosomal protein S17
- Chain RA
- Large subunit ribosomal RNA; LSU rRNA
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