3D structure

PDB id
6OPE (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of tRNA^ Ala(GGC) U32-A38 bound to near-cognate 70S A site
Experimental method
X-RAY DIFFRACTION
Resolution
3.1 Å

Loop

Sequence
CCG*CAAG
Length
7 nucleotides
Bulged bases
6OPE|1|QA|C|1400, 6OPE|1|QA|A|1503
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6OPE_051 not in the Motif Atlas
Homologous match to IL_4LFB_056
Geometric discrepancy: 0.1061
The information below is about IL_4LFB_056
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_61438.4
Basepair signature
cWW-L-cWW
Number of instances in this motif group
4

Unit IDs

6OPE|1|QA|C|1399
6OPE|1|QA|C|1400
6OPE|1|QA|G|1401
*
6OPE|1|QA|C|1501
6OPE|1|QA|A|1502
6OPE|1|QA|A|1503
6OPE|1|QA|G|1504

Current chains

Chain QA
16S rRNA

Nearby chains

Chain QV
Transfer RNA; tRNA
Chain QX
mRNA

Coloring options:


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