IL_6OPE_062

3D structure

PDB id

6OPE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^ Ala(GGC) U32-A38 bound to near-cognate 70S A site

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GA*UCC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OPE_062 not in the Motif Atlas

Homologous match to IL_7RQB_003

Geometric discrepancy: 0.1475

The information below is about IL_7RQB_003

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_42622.4

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

33

Unit IDs

6OPE|1|RA|G|43
6OPE|1|RA|A|44
*
6OPE|1|RA|U|434
6OPE|1|RA|C|435
6OPE|1|RA|C|436

Current chains

Chain RA

23S rRNA

Nearby chains

Chain R7

50S ribosomal protein L34