3D structure

PDB id
6OPE (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of tRNA^ Ala(GGC) U32-A38 bound to near-cognate 70S A site
Experimental method
X-RAY DIFFRACTION
Resolution
3.1 Å

Loop

Sequence
GGUAAAG*CGAAAAUGAUCGGGGC
Length
23 nucleotides
Bulged bases
6OPE|1|RA|A|1127, 6OPE|1|RA|U|1130
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6OPE_098 not in the Motif Atlas
Geometric match to IL_7RQB_040
Geometric discrepancy: 0.0889
The information below is about IL_7RQB_040
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_50715.1
Basepair signature
cWW-tSH-tHH-L-R-L-R-L-tWW-L-cWW-L-L-L-R-L
Number of instances in this motif group
4

Unit IDs

6OPE|1|RA|G|1024
6OPE|1|RA|G|1025
6OPE|1|RA|U|1026
6OPE|1|RA|A|1027
6OPE|1|RA|A|1028
6OPE|1|RA|A|1029
6OPE|1|RA|G|1030
*
6OPE|1|RA|C|1124
6OPE|1|RA|G|1125
6OPE|1|RA|A|1126
6OPE|1|RA|A|1127
6OPE|1|RA|A|1128
6OPE|1|RA|A|1129
6OPE|1|RA|U|1130
6OPE|1|RA|G|1131
6OPE|1|RA|A|1132
6OPE|1|RA|U|1133
6OPE|1|RA|C|1135
6OPE|1|RA|G|1136
6OPE|1|RA|G|1137
6OPE|1|RA|G|1138
6OPE|1|RA|G|1139
6OPE|1|RA|C|1140

Current chains

Chain RA
23S rRNA

Nearby chains

Chain R9
50S ribosomal protein L36
Chain RB
5S ribosomal RNA; 5S rRNA
Chain RE
50S ribosomal protein L3
Chain RN
50S ribosomal protein L13
Chain RQ
50S ribosomal protein L16

Coloring options:


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