IL_6OPE_113

3D structure

PDB id

6OPE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^ Ala(GGC) U32-A38 bound to near-cognate 70S A site

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CUAG*CGAAG

Length

9 nucleotides

Bulged bases

6OPE|1|RA|A|1554

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OPE_113 not in the Motif Atlas

Homologous match to IL_7RQB_057

Geometric discrepancy: 0.0775

The information below is about IL_7RQB_057

Detailed Annotation

tSH-tHW

Broad Annotation

No text annotation

Motif group

IL_04059.1

Basepair signature

cWW-tWH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

6OPE|1|RA|C|1437
6OPE|1|RA|U|1438
6OPE|1|RA|A|1439
6OPE|1|RA|G|1440
*
6OPE|1|RA|C|1551
6OPE|1|RA|G|1552
6OPE|1|RA|A|1553
6OPE|1|RA|A|1554
6OPE|1|RA|G|1555

Current chains

Chain RA

23S rRNA

Nearby chains