IL_6OPE_131

3D structure

PDB id

6OPE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^ Ala(GGC) U32-A38 bound to near-cognate 70S A site

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GGGAG*CGAAC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OPE_131 not in the Motif Atlas

Homologous match to IL_7RQB_075

Geometric discrepancy: 0.1191

The information below is about IL_7RQB_075

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_56467.8

Basepair signature

cWW-tSH-tSH-tHS-cWW

Number of instances in this motif group

29

Unit IDs

6OPE|1|RA|G|1856
6OPE|1|RA|G|1857
6OPE|1|RA|G|1858
6OPE|1|RA|A|1859
6OPE|1|RA|G|1860
*
6OPE|1|RA|C|1882
6OPE|1|RA|G|1883
6OPE|1|RA|A|1884
6OPE|1|RA|A|1885
6OPE|1|RA|C|1886

Current chains

Chain RA

23S rRNA

Nearby chains

Chain R1

50S ribosomal protein L28