3D structure

PDB id
6OPE (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of tRNA^ Ala(GGC) U32-A38 bound to near-cognate 70S A site
Experimental method
X-RAY DIFFRACTION
Resolution
3.1 Å

Loop

Sequence
GCGUAGGAUAG*CC
Length
13 nucleotides
Bulged bases
6OPE|1|RA|C|2111, 6OPE|1|RA|G|2112, 6OPE|1|RA|G|2115, 6OPE|1|RA|U|2118
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6OPE_141 not in the Motif Atlas
Geometric match to IL_7Q80_001
Geometric discrepancy: 0.307
The information below is about IL_7Q80_001
Detailed Annotation
Multiple bulged bases
Broad Annotation
No text annotation
Motif group
IL_84476.1
Basepair signature
cWW-cWW
Number of instances in this motif group
13

Unit IDs

6OPE|1|RA|G|2110
6OPE|1|RA|C|2111
6OPE|1|RA|G|2112
6OPE|1|RA|U|2113
6OPE|1|RA|A|2114
6OPE|1|RA|G|2115
6OPE|1|RA|G|2116
6OPE|1|RA|A|2117
6OPE|1|RA|U|2118
6OPE|1|RA|A|2119
6OPE|1|RA|G|2120
*
6OPE|1|RA|C|2178
6OPE|1|RA|C|2179

Current chains

Chain RA
23S rRNA

Nearby chains

No other chains within 10Å

Coloring options:


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