IL_6OPE_201

3D structure

PDB id

6OPE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^ Ala(GGC) U32-A38 bound to near-cognate 70S A site

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GAGUAG*CGCAGAUAC

Length

15 nucleotides

Bulged bases

6OPE|1|XA|A|702

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OPE_201 not in the Motif Atlas

Homologous match to IL_4LFB_031

Geometric discrepancy: 0.1059

The information below is about IL_4LFB_031

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_95727.1

Basepair signature

cWW-L-tSH-L-tHW-tHS-R-cWW-L

Number of instances in this motif group

1

Unit IDs

6OPE|1|XA|G|683
6OPE|1|XA|A|684
6OPE|1|XA|G|685
6OPE|1|XA|U|686
6OPE|1|XA|A|687
6OPE|1|XA|G|688
*
6OPE|1|XA|C|699
6OPE|1|XA|G|700
6OPE|1|XA|C|701
6OPE|1|XA|A|702
6OPE|1|XA|G|703
6OPE|1|XA|A|704
6OPE|1|XA|U|705
6OPE|1|XA|A|706
6OPE|1|XA|C|707

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XK

30S ribosomal protein S11

Chain YA

Large subunit ribosomal RNA; LSU rRNA