IL_6OPE_215

3D structure

PDB id

6OPE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^ Ala(GGC) U32-A38 bound to near-cognate 70S A site

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GUUGC*GGCACUC

Length

12 nucleotides

Bulged bases

6OPE|1|XA|U|1125

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OPE_215 not in the Motif Atlas

Geometric match to IL_4LFB_048

Geometric discrepancy: 0.3084

The information below is about IL_4LFB_048

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_85222.1

Basepair signature

cWW-L-R-L-R-L-cWW-L-L

Number of instances in this motif group

1

Unit IDs

6OPE|1|XA|G|1124
6OPE|1|XA|U|1125
6OPE|1|XA|U|1126
6OPE|1|XA|G|1127
6OPE|1|XA|C|1128
*
6OPE|1|XA|G|1143
6OPE|1|XA|G|1144
6OPE|1|XA|C|1145
6OPE|1|XA|A|1146
6OPE|1|XA|C|1147
6OPE|1|XA|U|1148
6OPE|1|XA|C|1149

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XI

30S ribosomal protein S9

Chain XJ

30S ribosomal protein S10