IL_6OPE_218

3D structure

PDB id

6OPE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^ Ala(GGC) U32-A38 bound to near-cognate 70S A site

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GAUG*CUAAUC

Length

10 nucleotides

Bulged bases

6OPE|1|XA|U|1257, 6OPE|1|XA|A|1280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OPE_218 not in the Motif Atlas

Homologous match to IL_4LFB_052

Geometric discrepancy: 0.1006

The information below is about IL_4LFB_052

Detailed Annotation

180 degree turn

Broad Annotation

No text annotation

Motif group

IL_11344.2

Basepair signature

cWW-cSS-L-cWW

Number of instances in this motif group

2

Unit IDs

6OPE|1|XA|G|1255
6OPE|1|XA|A|1256
6OPE|1|XA|U|1257
6OPE|1|XA|G|1258
*
6OPE|1|XA|C|1277
6OPE|1|XA|U|1278
6OPE|1|XA|A|1279
6OPE|1|XA|A|1280
6OPE|1|XA|U|1281
6OPE|1|XA|C|1282

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XC

30S ribosomal protein S3

Chain XI

30S ribosomal protein S9

Chain XJ

30S ribosomal protein S10

Chain XN

30S ribosomal protein S14 type Z