IL_6OPE_241

3D structure

PDB id

6OPE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^ Ala(GGC) U32-A38 bound to near-cognate 70S A site

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGAAU*AUAG

Length

9 nucleotides

Bulged bases

6OPE|1|YA|A|283

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OPE_241 not in the Motif Atlas

Homologous match to IL_7RQB_011

Geometric discrepancy: 0.1063

The information below is about IL_7RQB_011

Detailed Annotation

tSH-tHW

Broad Annotation

No text annotation

Motif group

IL_04059.1

Basepair signature

cWW-tWH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

6OPE|1|YA|C|280
6OPE|1|YA|G|281
6OPE|1|YA|A|282
6OPE|1|YA|A|283
6OPE|1|YA|U|284
*
6OPE|1|YA|A|357
6OPE|1|YA|U|358
6OPE|1|YA|A|359
6OPE|1|YA|G|360

Current chains

Chain YA

23S rRNA

Nearby chains