3D structure

PDB id
6OPE (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of tRNA^ Ala(GGC) U32-A38 bound to near-cognate 70S A site
Experimental method
X-RAY DIFFRACTION
Resolution
3.1 Å

Loop

Sequence
UGAAG*UGGAG
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6OPE_251 not in the Motif Atlas
Geometric match to IL_7RQB_021
Geometric discrepancy: 0.0897
The information below is about IL_7RQB_021
Detailed Annotation
Triple sheared
Broad Annotation
No text annotation
Motif group
IL_56467.8
Basepair signature
cWW-tSH-tSH-tHS-cWW
Number of instances in this motif group
29

Unit IDs

6OPE|1|YA|U|703
6OPE|1|YA|G|704
6OPE|1|YA|A|705
6OPE|1|YA|A|706
6OPE|1|YA|G|707
*
6OPE|1|YA|U|724
6OPE|1|YA|G|725
6OPE|1|YA|G|726
6OPE|1|YA|A|727
6OPE|1|YA|G|728

Current chains

Chain YA
23S rRNA

Nearby chains

Chain YD
50S ribosomal protein L2

Coloring options:


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