IL_6OPE_258
3D structure
- PDB id
- 6OPE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of tRNA^ Ala(GGC) U32-A38 bound to near-cognate 70S A site
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- GA*UCC
- Length
- 5 nucleotides
- Bulged bases (A, C, G, U)
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6OPE_258 not in the Motif Atlas
- Geometric match to IL_4V9F_034
- Geometric discrepancy: 0.0909
- The information below is about IL_4V9F_034
- Detailed Annotation
- Minor groove platform
- Broad Annotation
- No text annotation
- Motif group
- IL_42622.5
- Basepair signature
- cWW-cSH-tHS-cWW
- Number of instances in this motif group
- 33
Unit IDs
6OPE|1|YA|G|862
6OPE|1|YA|A|863
*
6OPE|1|YA|U|913
6OPE|1|YA|C|914
6OPE|1|YA|C|915
Current chains
- Chain YA
- 23S rRNA
Nearby chains
- Chain YB
- 5S ribosomal RNA; 5S rRNA
- Chain YQ
- 50S ribosomal protein L16
- Chain YZ
- 50S ribosomal protein L25
Coloring options: