IL_6OPE_288

3D structure

PDB id

6OPE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^ Ala(GGC) U32-A38 bound to near-cognate 70S A site

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UG*CAACAAG

Length

9 nucleotides

Bulged bases

6OPE|1|YA|A|1510

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OPE_288 not in the Motif Atlas

Homologous match to IL_7RQB_061

Geometric discrepancy: 0.5852

The information below is about IL_7RQB_061

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_52493.1

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

2

Unit IDs

6OPE|1|YA|U|1482
6OPE|1|YA|G|1483
*
6OPE|1|YA|C|1506
6OPE|1|YA|A|1507
6OPE|1|YA|A|1508
6OPE|1|YA|C|1509
6OPE|1|YA|A|1510
6OPE|1|YA|A|1511
6OPE|1|YA|G|1512

Current chains

Chain YA

23S rRNA

Nearby chains