3D structure

PDB id
6OPE (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of tRNA^ Ala(GGC) U32-A38 bound to near-cognate 70S A site
Experimental method
X-RAY DIFFRACTION
Resolution
3.1 Å

Loop

Sequence
ACUCUG*CUGU
Length
10 nucleotides
Bulged bases
6OPE|1|YA|G|1992
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6OPE_294 not in the Motif Atlas
Geometric match to IL_7RQB_067
Geometric discrepancy: 0.1026
The information below is about IL_7RQB_067
Detailed Annotation
Intercalated tWH
Broad Annotation
Intercalated tWH
Motif group
IL_76273.1
Basepair signature
cWW-L-R-cWW
Number of instances in this motif group
14

Unit IDs

6OPE|1|YA|A|1669
6OPE|1|YA|C|1670
6OPE|1|YA|U|1671
6OPE|1|YA|C|1672
6OPE|1|YA|U|1673
6OPE|1|YA|G|1674
*
6OPE|1|YA|C|1990
6OPE|1|YA|U|1991
6OPE|1|YA|G|1992
6OPE|1|YA|U|1993

Current chains

Chain YA
23S rRNA

Nearby chains

Chain YE
50S ribosomal protein L3
Chain YO
50S ribosomal protein L14

Coloring options:


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