IL_6OPE_331

3D structure

PDB id

6OPE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^ Ala(GGC) U32-A38 bound to near-cognate 70S A site

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UUUCC*GGUAG

Length

10 nucleotides

Bulged bases

6OPE|1|YA|U|2689, 6OPE|1|YA|C|2690

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OPE_331 not in the Motif Atlas

Homologous match to IL_7RQB_105

Geometric discrepancy: 0.0853

The information below is about IL_7RQB_105

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_08296.3

Basepair signature

cWW-L-tHS-L-cWW

Number of instances in this motif group

4

Unit IDs

6OPE|1|YA|U|2687
6OPE|1|YA|U|2688
6OPE|1|YA|U|2689
6OPE|1|YA|C|2690
6OPE|1|YA|C|2691
*
6OPE|1|YA|G|2718
6OPE|1|YA|G|2719
6OPE|1|YA|U|2720
6OPE|1|YA|A|2721
6OPE|1|YA|G|2722

Current chains

Chain YA

23S rRNA

Nearby chains

Chain YE

50S ribosomal protein L3

Chain YR

50S ribosomal protein L17

Chain YT

50S ribosomal protein L19