IL_6OPE_353

3D structure

PDB id

6OPE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^ Ala(GGC) U32-A38 bound to near-cognate 70S A site

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GCAAU*AGC

Length

8 nucleotides

Bulged bases

6OPE|1|RA|G|1332

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OPE_353 not in the Motif Atlas

Homologous match to IL_9DFE_050

Geometric discrepancy: 0.18

The information below is about IL_9DFE_050

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.11

Basepair signature

cWW-cWS-cSH-tWH-cWW-L

Number of instances in this motif group

19

Unit IDs

6OPE|1|RA|G|1319
6OPE|1|RA|C|1320
6OPE|1|RA|A|1321
6OPE|1|RA|A|1322
6OPE|1|RA|U|1323
*
6OPE|1|RA|A|1331
6OPE|1|RA|G|1332
6OPE|1|RA|C|1333

Current chains

Chain RA

23S rRNA

Nearby chains

Chain RW

50S ribosomal protein L22