IL_6OPE_362
3D structure
- PDB id
- 6OPE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of tRNA^ Ala(GGC) U32-A38 bound to near-cognate 70S A site
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- GGCUAG*CAAACC
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6OPE_362 not in the Motif Atlas
- Geometric match to IL_4N0T_001
- Geometric discrepancy: 0.3369
- The information below is about IL_4N0T_001
- Detailed Annotation
- Double sheared; A in syn; two near cWW pairs
- Broad Annotation
- Double sheared; A in syn; two near cWW pairs
- Motif group
- IL_71294.3
- Basepair signature
- cWW-L-R-L-R-L-R-L-R-cWW
- Number of instances in this motif group
- 2
Unit IDs
6OPE|1|YA|G|874
6OPE|1|YA|G|875
6OPE|1|YA|C|876
6OPE|1|YA|U|877
6OPE|1|YA|A|878
6OPE|1|YA|G|879
*
6OPE|1|YA|C|898
6OPE|1|YA|A|899
6OPE|1|YA|A|900
6OPE|1|YA|A|901
6OPE|1|YA|C|902
6OPE|1|YA|C|903
Current chains
- Chain YA
- 23S rRNA
Nearby chains
- Chain XY
- Transfer RNA; tRNA
- Chain YQ
- 50S ribosomal protein L16
- Chain YZ
- 50S ribosomal protein L25
Coloring options: